SubtiBank SubtiBank
ydeR [2018-10-04 20:23:05]
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ydeR [2018-10-04 20:23:05]

similar to antibiotic resistance protein
locus
BSU05310
pI
10.76
mw
40.99 kDa
protein length
395 aa Sequence Blast
gene length
1185 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.12|Other transporters]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.14|Resistance against toxins/ antibiotics/ based on similarity]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    576,946 → 578,133

    The protein

    Protein family

  • major facilitator superfamily (according to Swiss-Prot)

    • [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Biological materials

    Mutant

  • MGNA-C139 (ydeR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2137 NBRP B. subtilis, Japan]
  • BKE05310 (Δ[gene|6B11EE4269A2CFF8A37C63FA41EA6BAD2727D0A4|ydeR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05310 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATGAATGAACTCCTTTT, downstream forward: _UP4_TAAGTATTTCACCAAAAATA
  • BKK05310 (Δ[gene|6B11EE4269A2CFF8A37C63FA41EA6BAD2727D0A4|ydeR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05310 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATGAATGAACTCCTTTT, downstream forward: _UP4_TAAGTATTTCACCAAAAATA